Publications
List of Publications
2018
Bach-Pages M., and Preston G.M. (2018). “Methods to Quantify Biotic-Induced Stress in Plants”. Methods Mol Biol., 1734:241-255. DOI: 10.1007/978-1-4939-7604-1_19
Bolla, J.R., Sauer, J.B., Wu, D., Mehmood, S., Allison, T.M. and Robinson, C.V. (2018) Direct Observation of the Influence of Cardiolipin and Antibiotics on Lipid II Binding to MurJ, Nature Chemistry, 10: 363-371. DOI: 10.1038/nchem.2919
Bury, C. S., Brooks‐Bartlett, J. C., Walsh, S. P. and Garman, E. F. (2018), Estimate your dose: RADDOSE‐3D. Protein Science, 27: 217-228. DOI:10.1002/pro.3302
Brown T., Howe FSH, Murray SC, Wouters M, Lorenz P et al. (2018) Antisense transcription-dependent chromatin signature modulates sense transcript dynamics Molecular Systems Biology 14, e8007 DOI: 10.15252/msb.20178007
D'Abrantes, S., Gratton, S., Reynolds, P., Kriechbaumer, V., McKenna, J., Barnard, S., Clarke, D. T., Botchway, S. W. (2018) Super-Resolution Nanoscopy Imaging Applied to DNA Double-Strand Breaks, Radiation Research, 189(1):19-31. DOI: 10.1667/RR14594.1
Dattani, A., Sridhar, D., Aboobaker, A. (2018) Planarian flatworms as a new model system for understanding the epigenetic regulation of stem cell pluripotency and differentiation. Semin Cell Dev Biol DOI: 10.1016/j.semcdb.2018.04.007
Eguchi,A., Isbister, J., Ahmad, N,. Stringer, S.M. (2018). “The Emergence of Polychronization and Feature Binding in a Spiking Neural Network Model of the Primate Ventral Visual System.” Psychological Review 125(4), 545-571. DOI: 10.1037/rev0000103
Harrison, M.C., Jongepier, E., Robertson, H.M., Arning, N., [...] and Bornberg-Bauer, E. (2018) Hemimetabolous Genomes Reveal Molecular Basis of Termite Eusociality, Nature Ecology & Evolution, 2, 557–566. DOI: 10.1038/s41559-017-0459-1
Howie, D., Bokum, A.T., Necula, A.S., Cobbold. S.P., Waldmann, H. (2018) “The Role of Lipid Metabolism in T Lymphocyte Differentiation and Survival”, Frontiers in Immunology, DOI: 10.3389/fimmu.2017.01949
Johnson, K. V-A., Foster, K. R (2018) Why does the microbiome affect behaviour? Nature Reviews Biology DOI: 10.1038/s41579-018-0014-3
Kittelmann S, Buffry AD, Franke FA, Almudi I, Yoth M, Sabaris G, et al. (2018) Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution. PLoS Genet 14(5): e1007375. DOI: 10.1371/journal.pgen.1007375
Kriechbaumer, V., Breeze, E., Pain, C., Tolmie, F., Frigerio, L., Hawes, C. (2018). Arabidopsis Lunapark proteins are involved in ER cisternae formation. New Phytologist doi.org/10.1111/nph.15228
Leary, A. Y., Sanguankiattichai N., Duggan, C., Tumtas, Y., Panday, P., Segretin M. E., Linares, J. S., Savage, Z. D., Yow, R. J., and Bozkurt, T. O. (2018) Modulation of plant autophagy during pathogen attack. Journal of Experimental Botany 69:6. DOI: 0.1093/jxb/erx425
Leeks, A., Segredo-Ortero, E.A., Sanjuan, R., West, S.A. (2018) Beneficial coinfection can promote within-host viral diversity. Virus Evolution 4:2 DOI: 10.1093/ve/vey028
Levi, J., Pozniak, A., Heath, K., Hill, A. (2018) “The impact of HIV prevalence, conflict, corruption and cash on treatment cascades: data from 137 countries”. Journal of Virus Eradication. 2018; 4: e30-e41. issn 2055-66-59
Muñoz-Rodríguez, P., T. Caruthers, J.R.I. Wood, B.R.M. Williams, K. Weitemier, B. Kronmiller, D. Ellis, N.L. Anglin, L. Longway, S.A. Harris, M.D. Rausher, S. Kelly, A. Liston, R. W. Scotland (2018). “Reconciling conflicting phylogenies in the origin of sweet potato and dispersal to Polynesia”. Current Biology, 28:8: 1246-1256 DOI: 10.1016/j.cub.2018.03.020
Ni, T., Williams, S. I., Rezelj, S., Anderluh, G., Harlos, K., Stansfeld, P. J., Gilbert, R. J. C. (2018) “Structures of monomeric and oligomeric forms of the Toxoplasma gondii perforin-like protein 1”. Science Advances Vol. 4 (3). DOI: 10.1126/sciadv.aaq0762
Pong, S,K., & Gullerova, M. (2018) “Non-canonical functions of microRNA pathway enzymes — Drosha, DGCR8, Dicer and Ago proteins”. FEBS Letters DOI: 10.1002/1873-3468.13196
Regan, S. E., Lee, R. J., MacLeod, D. I. A., and Smithson, H. E., (2018) Are hue and saturation carried in different neural channels? Journal of the Optical Society of America Vol 35 (4) B299-308 DOI: 10.1364/JOSAA.35.00B299
Royall, A., Maeso, I., Dunwell, T., Holland, P. (2018) Mouse Obox and Crxos Modulate Preimplantation Transcriptional Profiles Revealing Similarity Between Paralogous Mouse and Human Homeobox Genes, EvoDevo, 9:2 DOI: 10.1186/s13227-018-0091-4
Velasquez-Arroya, B., Diaz-Mendoza, M., Gomez-Sanchez, A., Moreno-Garcia, B., Estrella Santamaria, M., Torija-Bonilla, M., Hensel, G., Kumlehn, J., Martinez, and M., Diaz, I. (2018) Silencing Barley Cystatins HvCPI-2 and HvCPI-4 Specifically Modifies Leaf Responses to Drought Stress, Plant Cell & Environment, DOI: 10.1111/pce.13178
Wallis, A. B. A., and Nieduszynski C,A. (2018) Investigating the role of Rts1 in DNA replication initiation. Wellcome Open Res 3:23 DOI 10.12688/wellcomeopenres.13884.1
2017
Ash, P. A., Carr, S. B., Reeve, H. A., Skorupskaitė, A., Rowbotham, J.S., Shutt, R., Frogley, M.D., Evans, R.M., Cinque, G., Armstrong F.A. and Vincent, K.A. (2017) Generating Single Metalloprotein Crystals in Well-defined Redox States: Electrochemical Control Combined with Infrared Imaging of a NiFe Hydrogenase Crystal, Chem Commun, 53: 5858-5861. DOI: 10.1039/c7cc02591b
Azad, A., Yin Lim, S., D'Costa, Z., Jones, K., Diana, A., Sansom, O.J., Kruger, P., Liu, S., McKenna, W.G., Dushek, O., Muschel, R.J., Fokas, E. (2017) PD‐L1 Blockade Enhances Response of Pancreatic Ductal Adenocarcinoma to Radiotherapy, EMBO Molecular Medicine, 9: 167-80. DOI: 10.15252/emmm.201606674
Bach-Pages, M., Castello, A., Preston, G., (2017) Plant RNA Interactome Capture: Revealing the PlantRBPome, Trends in Plant Sciences, 22(6): 449-451. DOI: 10.1016/j.tplants.2017.04.006
Belfield, E.J., Ding, Z.J., Jamieson, F.J.C., Visscher, A.M., Zheng, S.J., Mithani, A., and Harberd, N.P. (2017) DNA mismatch repair preferentially protects genes from mutation. Genome Res., doi:10.1101/gr.219303.116
Bonnot, C., Proust, H., Pinson, B., Colbalchini, F.P.L., Lesly-Veillard, A., Breuninger, H., Champion, C., Hetherington, A.J., Kelly, S. and Dolan, L. (2017) Functional PTB Phosphate Transporters are Present in Streptophyte algae and Early Diverging Land Plants, New Phytologist, 214: 1158–1171. DOI: 10.1111/nph.14431
Border, P. and Walker, J. (2017) New Plant Breeding Techniques, POSTNOTE 548.
Cahill, S.T., Cain, R., Wang, D.Y., Lohans, C.T., Wareham, D.W., Oswin, H.P., Mohammed, J., Spemcer, J, Fishwick, C.W.G., McDonough, M.A., Schofield, C.J., Brem, J. (2017) Cyclic Boronates Inhibit All Classes of β-Lactamase, Antimicrobial Agents and Chemotherapy, DOI: 10.1128/AAC.02260-16
Chong, E.E Z., Barreiros, I.V., Li, B., Kohl, M.M., and Booth, M.J. (2017) “Fast multiplane functional imaging combining acousto-optic switching and remote focusing”. Proc. SPIE 10070, Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXIV, 100700X ; doi:10.1117/12.2251476
Hetherington, A.J., Dolan, L. (2017) The Evolution of Lycopsid Rooting Structures: Conservatism and Disparity, New Phytologist, 215: 538-44. DOI: 10.1111/nph.14324
Howie, D., Cobbold, S.P., Adams, E., Bokum, A.T., Necula, A.S., Zhang, W., Huang, H., Roberts, D. J., Thomas, B., Hester, S.S., Vaux,D. J., Betz,A.G., Waldmann, H. (2017) Foxp3 drives oxidative phosphorylation and protection from lipotoxicity Journal of Clinical Investigation, Insight DOI: 10.1172/jci.insight.89160
Johnson, K.V-A., Aplin, L.M., Cole, E.F., Farine, D.R., Firth, J.A., Patrick, S.C., Sheldon, B.C. (2017) Male Great Tits Assort by Personality During the Breeding Season, Animal Behaviour, Volume 128, June 2017, Pages 21–32. DOI: https://doi.org/10.1016/j.anbehav.2017.04.001
Kovaltsuk, A., Krawczyk, K., Galson, J., Kelly, D., Deane, C., and Truck, J. (2017) How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data, Front. Immunol. DOI: 10.3389/fimmu.2017.01753
Kuss, S., Tanner, E. E. L., Ordovas-Montanes, M., & Compton, R. G. (2017). “Electrochemical recognition and quantification of cytochrome c expression in Bacillus subtilis and aerobe/anaerobe Escherichia coli using N, N, N′, N′-tetramethyl-para-phenylene-diamine (TMPD)”. Chemical Science, 8(11), 7682-7688.
DOI: 10.1039/C7SC03498A
Le Page, S., Sepil, I., Flintham, E., Pizzari, T., Carazo, P. and Wigby, S. (2017) Male Relatedness and Familiarity are Required to Modulate Male-induced Harm to Females in Drosophila, Proceedings of the Royal Society B: Biological Sciences, 284, 20170441. DOI: 10.1098/rspb.2017.0441
Lohans, C.T., Wang, D.Y., Jorgensen, C., Cahill, S.T., Clifton, I.J., McDonough, M.A., Oswin, H.P., Spencer, J., Domene, C., Claridge, T.D.W. and Schofield, C.J. (2017) 13C-Carbamylation as a Mechanistic Probe for the Inhibition of Class D β-lactamases by Avibactam and Halide Ions, Organic & Biomolecular Chemistry, 15(28), 6024-6032. DOI: 10.1039/C7OB01514C
Misas-Villamil, J.C., van der Burgh, A.M., Grosse-Holz, F., Bach-Pages, M., Kovács, J., Kaschani, F., Schilasky, S., Emon, A.E., Ruben, M., Kaiser, M., Overkleeft, H.S., van der Hoorn, R.A. (2017) Subunit-selective Proteasome Activity Profiling Uncovers Uncoupled Proteasome Subunit Activities during Bacterial Infections, The Plant Journal, 90: 418-430. DOI: 10.1111/tpj.13494
Parsons, J. (2017) Can We Fix It?, The Biologist 64, 12-15.
Parsons, J. (2017) CRISPR/Cas9: A Revolution in Genetic Disease Treatment?, The New Collection, 12, 51-64. ISSN 1757-2541
Sahu, S., Dattani, A., Aboobaker, A. (2017) “Secrets from immortal worms: What can we learn about biological ageing from the planarian model system?” Seminars in Cell and Developmental Biology (2017). DOI: 10.1016/j.semcdb.2017.08.028
Schwager, E.E., Sharma, P.P., Clarke, T., Leite, D.J., Wierschin, T., Pechmann, M., Akiyama-Oda, Y., Esposito, L., Bechsgaard, J., Bilde, T., Buffry, A.D., Chao, H., Dinh, H., Doddapaneni, H., Dugan, S., Eibner, C., Extavour, C.G., Funch, P., Garb, J., Gonzalez, L.B., Gonzalez, V.L., Griffiths-Jones, S., Han, Y., Hayashi, C., Hilbrant, M., Hughes, D.S.T., Janssen, R., Lee, S.L., Maeso, I., Murali, S.C., Muzny, D.M., Nunes da Fonseca, R., Paese, C.L.B., Qu, J., Ronshaugen, M., Schomburg, C., Schönauer, A., Stollewerk, A., Torres-Oliva, M., Turetzek, N., Vanthournout, B., Werren, J.H., Wolff, C., Worley, K.C., Bucher, G., Gibbs, R.A., Coddington, J., Oda, H., Stanke, M., Ayoub, N.A., Prpic, N.-M., Flot, J.-F., Posnien, N., Richards, S., McGregor, A.P., (2017) The House Spider Genome Reveals an Ancient Whole-genome Duplication During Arachnid Evolution, BMC Biology, 15, 62. DOI: https://doi.org/10.1186/s12915-017-0399-x
Taylor, L.A., Portugal, S.J., Biro, D. (2017) Homing Pigeons (Columba livia) Modulate Wingbeat Characteristics as a Function of Route Familiarity, Journal of Experimental Biology, 220: 2908-2915. DOI: 10.1242/jeb.154039
Tsuda, M., Tone, Y., , Ogawa, C., Nagaoka, Y., Katsumata, M., Necula, A., Howie, D., Masuda, E., Waldmann, H., Tone, M. (2017) "A Bacterial Artificial Chromosome Reporter System for Expression of the Human FOXP3 Gene in Mouse Regulatory T-Cells" Frontiers in Immunology DOI: 10.3389/fimmu.2017.00279
Walsh, E.J., Feuerborn, A., Wheeler, J.H.R., Na Tan, A., Durham, W.M., Foster, K.R. and Cook, P.R. (2017) Microfluidics with Fluid Walls, Nature Communications, 8: 816. DOI: 10.1038/s41467-017-00846-4
Wang, P., Hendron, R.-W. and Kelly, S. (2017) Transcriptional Control of Photosynthetic Capacity: Conservation and Divergence from Arabidopsis to Rice, New Phytologist, 216: 32–45. DOI: 10.1111/nph.14682
Wang, P., Karki, S., Biswal, A.K., Lin, H.-C., Dionora, M.J., Riza,l G., Yin, X., Schuler, M.L., Hughes, T., Fouracre, J.P., Jamous, B.A., Sedelnikova, O., Lo, S.-F., Bandyopadhyay, A., Yu, S.-M., Kelly, S., Quick, W.P., Langdale, J.A. (2017) Candidate Regulators of Early Leaf Development in Maize Perturb Hormone Signalling and Secondary Cell Wall Formation When Constitutively Expressed in Rice, Scientific Reports, 7: 4535. DOI: 10.1038/s41598-017-04361-w
Watts, I., Nagy, M., Holbrook, R.I., Biro, D., and Burt de Perera, T. (2017) Validating Two-dimensional Leadership Models on Three-dimensionally Structured Fish Schools, Royal Society Open Science, 4, 160804.
Willems, N., Lelimousin, M., Koldsø, H., Sansom, M.S.P. (2017) Interfacial Activation of M37 Lipase: A Multi-Scale Simulation Study, Biochimica et Biophysica Acta (BBA) – Biomembranes, 1859: 340-9. DOI: https://doi.org/10.1016/j.bbamem.2016.12.012
Willems, N., Lelimousin, M., Skjold-Jørgensen, J., Svendsen, A., Sansom, M.S.P. (2017) The Effect of Mutations in the Lid Region of Thermomyces lanuginosus Lipase on Interactions with Triglyceride Surfaces: A Multi-Scale Simulation Study, Chemistry and Physics of Lipids, S0009-3084(17)30102-0. DOI: https://doi.org/10.1016/j.chemphyslip.2017.08.004
Willems N., Urtizberea, A., Verre, A.F., Iliut, M., Lelimousin, M., Hirtz, M., Vijayaraghavan, A., Sansom, M.S.P. (2017) Biomimetic Phospholipid Membrane Organization on Graphene and Graphene Oxide Surfaces: A Molecular Dynamics Simulation Study, ACS Nano, 11: 1613-25. DOI: 10.1021/acsnano.6b07352
Wittmann, S., Renner, M., Watts, B., Adams, O. , Huseyin, M., Baejen, C., El Omari, K., Kilchert, C., Heo, D., Kecman, T., Cramer, P., Grimes, J. and Vasiljeva, L. (2017). The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA. Nature Communications, 8, p.14861. DOI: 10.1038/ncomms14861
Wood, J.R.I., Muñoz-Rodríguez, P., Degen, R. and Scotland, R.W. (2017) New Species of Ipomoea (Convolvulaceae) from South America, Phytokeys, 88: 1-38. DOI: https://doi.org/10.3897/phytokeys.88.12891
Yang, L., Titlow, J., Ennis, D., Smith, C., Mitchell, J., Young, F.L., Waddell, S., Ish-Horowicz, D., Davis, I. (2017) Single Molecule Fluorescence in situ Hybridisation for Quantitating Post-transcriptional Regulation in Drosophila Brains, Methods, 126: 166-176. DOI: https://doi.org/10.1016/j.ymeth.2017.06.025
2016
Ahmad, N, Higgins,I., Walker,K.M.M., and Stringer, S.M., (2016) “Harmonic Training and the Formation of Pitch Representation in a Neural Network Model of the Auditory Brain.” Frontiers in Computational Neuroscience 10 (March): 24. https://doi.org/10.3389/fncom.2016.00024
Amos, S-B.T.A., Vermeer, L.S., Ferguson, P.M., Kozlowska, J., Davy, M., Bui Tam, T., Drake, A.F., Lorenz, C.D., Mason, A.J. (2016) Antimicrobial Peptide Potency is Facilitated by Greater Conformational Flexibility when Binding to Gram-negative Bacterial Inner Membranes, Scientific Reports, 6: 37639. DOI: 10.1038/srep37639
Betts, A., Gifford, D., MacLean, R.C. and King, K.C. (2016) Parasite Diversity Drives Rapid Host Dynamics and Evolution of Resistance in a Bacteria-phage System, Evolution, Volume 70: 969–978. DOI: 10.1111/evo.12909
Betts, A., Rafaluk, C., King, K.C. (2016) Host and Parasite Evolution in a Tangled Bank, Trends in Parasitology, S1471-4922: 30120-9. DOI: https://doi.org/10.1016/j.pt.2016.08.003
Brem, J., Cain, R., Cahill, S., et al. (2016) Structural Basis of Metallo-β-lactamase, Serine-β-lactamase and Penicillin-binding Protein Inhibition by Cyclic Boronates, Nature Communications, 7: 12406. DOI: 10.1038/ncomms12406
Breuninger, H., Thamm, A., Streubel, S., Sakayama, H., Nishiyama, T., Dolan, L. (2016) Diversification of a Transcription Factor Family Led to the Evolution of Antagonistically Acting Genetic Regulators of Root Hair Growth, Current Biology, 26, 1622–1628. DOI: https://doi.org/10.1016/j.cub.2016.04.060
Buffry, A.D., Mendes, C.C. and McGregor, A.P. (2016) The Functionality and Evolution of Eukaryotic Transcriptional Enhancers, Advances in Genetics, 96: 143-187. DOI: https://doi.org/10.1016/bs.adgen.2016.08.004
Cahill, S.T., Tarhonskaya, H., Rydzik, A.M., Flashman, E., McDonough, M.A., Schofield, C.J., Brem, J. (2016) Use of Ferrous Iron by Metallo-β-lactamases, Journal of Inorganic Biochemistry, 163: 185-193. DOI: https://doi.org/10.1016/j.jinorgbio.2016.07.013
Cardiel, J.M. and Muñoz-Rodríguez, P. (2016) Proposals to Conserve the Names Acalypha communis against A. hirsuta and A. brasiliensis against A. subsana (Euphorbiaceae), Taxon, 65(2): 391. DOI: https://doi.org/10.12705/652.23
Catarino, B., Hetherington, A.J., Emms, D.M., Kelly, S., Dolan, L. (2016) The Stepwise Increase in the Number of Transcription Factor Families in the Precambrian Predated the Diversification of Plants On Land, Molecular Biology and Evolution, 33: 2815-9. DOI: https://doi.org/10.1093/molbev/msw155
Draper, D., Muñoz-Rodríguez, P., Marques, I. and Moreno Saiz, J.C. (2016) Effects of Climate Change on Threatened Spanish Medicinal and Aromatic Species: Predicting Future Trends and Defining Conservation Guidelines, Israel Journal of Plant Sciences, special issue: New Thinking and Conceptual Advances in Plant Conservation, 309-319. DOI: http://dx.doi.org/10.1080/07929978.2016.1258257
Expert Round Table on Acceptance and Re-implementation of Bacteriophage Therapy (incl. Betts, A). (2016) Silk Route to the Acceptance and Re-implementation of Bacteriophage Therapy, Biotechnology Journal, 11(5): 595-600. DOI: 10.1002/biot.201600023
Galson, J.D., Trück, J., Clutterbuck, E.A., Fowler, A., Cerundolo, V., Pollard, A.J., Lunter, G., Kelly D.F. (2016) B-cell Repertoire Dynamics after Sequential Hepatitis B Vaccination and Evidence for Cross-reactive B-cell Activation, Genome Medicine, 8: 1-13. DOI: https://doi.org/10.1186/s13073-016-0322-z
Hetherington, A.J., Dubrovsky, J.G., Dolan, L. (2016) Unique Cellular Organization in the Oldest Root Meristem, Current Biology, 26: 1629-1633. DOI: http://dx.doi.org/10.1016/j.cub.2016.04.072
Hetherington, A.J., Berry, C.M., Dolan, L. (2016) Networks of Highly Branched Stigmarian Rootlets Developed on the First Giant Trees, Proceedings of the National Academy of Sciences USA, 113: 6695-6700. DOI: 10.1073/pnas.1514427113
Honkanen, S., Jones, V.A.S., Morieri, G., Champion C., Hetherington, A.J., Kelly, S., Proust, H., Saint-Marcoux, D., Prescott, H., Dolan, L. (2016) The Mechanism Forming the Cell Surface of Tip-Growing Rooting Cells Is Conserved among Land Plants, Current Biology, 26: 3238-44. DOI: 10.1016/j.cub.2016.09.062
Johnson, K.V.-A. and Burnet, P.W.J. (2016) Microbiome: Should We Diversify from Diversity?, Gut Microbes, 7(6): 455-458. DOI: 10.1080/19490976.2016.1241933
Johnson, K.V.-A. and Dunbar, R.I.M. (2016) Pain Tolerance Predicts Human Social Network Size, Scientific Reports, 6, 25267. DOI: 10.1038/srep25267
Kabadayi, C., Taylor, L.A., von Bayern, A.M.P., Osvath, M. (2016) Ravens, New Caledonian Crows and Jackdaws Parallel Great Apes in Motor Self-regulation Despite Smaller Brains, Royal Society Open Science, 3: 160104. DOI: 10.1098/rsos.160104
King, K.C., Brockhurst, M.A., Vasieva, O., Paterson, S., Betts, A., Ford, S.A., Frost, C.L., Horsburgh, M.J., Haldenby, S., Hurst, G.D.D. (2016) Rapid Evolution of Microbe-mediated Protection against Pathogens in a Worm Host, ISME Journal, 10, 1915–1924. DOI: 10.1038/ismej.2015.259
Kirchhelle, C., Chow, C-M., Foucart, C., Neto, H., Stierhof, Y-D., Kalde, M., Fricker, M., Smith, R.S., Jeruaslem, A., Irani, N., Moore, I.,(2016) The Specification of Geometric Edges by a Plant Rab GTPase Is an Essential Cell-Patterning Principle During Organogenesis in Arabidopsis, Developmental Cell, Volume 36, Issue 4, 386 – 400. DOI: http://dx.doi.org/10.1016/j.devcel.2016.01.020
Lei, A., Maloy K.J. (2016) Colon Cancer in the Land of NOD: NLRX1 as an Intrinsic Tumor Suppressor, Trends in Immunology, 37: 569-570. DOI: https://doi.org/10.1016/j.it.2016.07.004
Lever, M., Lim, H.-S., Kruger, P., Nguyen, J., Trendel, N., Abu-Shah, E., Maini, P.K., van der Merwe, P.A., Dushek, O. (2016) Architecture of a Minimal Signaling Pathway Explains the T-cell Response to a 1 Million-fold Variation in Antigen Affinity and Dose, Proceedings of the National Academy of Sciences USA, 113: E6630-E8. DOI: 10.1073/pnas.1608820113
Llibre, A., Lopez-Macias, C., Marafioti, T., Mehta, H., Partridge, A., Kanzig, C., Rivellese, F., Galson, J.D., Walker, L.J., Milne, P., Phillips, R.E., Kelly, D., Freeman, G.J., El Sheikh, M.E., Klenerman P., Willberg, C. B. (2016) LLT1 and CD161 Expression in Human Germinal Centers Promotes B Cell Activation and CXCR4 downregulation, Journal of Immunology, 1: 196(5):2085-94. DOI: 10.4049/jimmunol.1502462
McLoughlin, K., Schluter, J., Rakoff-Nahoum, S., Smith Adrian, L., Foster Kevin, R. (2016) Host Selection of Microbiota via Differential Adhesion, Cell Host and Microbe, 19: 550-559. DOI: 10.1016/j.chom.2016.02.021
Mehrabi, Z., McMillan, V.E., Clark, I.M., Canning, G., Hammond-Kosack, K.E., Preston, G., Hirsch, P.R., Mauchline, T.H. (2016) Pseudomonas spp. Diversity is Negatively Associated with Suppression of the Wheat Take-all Pathogen, Scientific Reports 6, 34681. DOI: 10.1038/srep34681
Muñoz-Rodríguez, P., D. Draper & J.C. Moreno Saiz (2016). Global Strategy for Plant Conservation: Inadequate In-situ Conservation of Threatened Flora in Spain, Israel Journal of Plant Sciences, special issue: New Thinking and Conceptual Advances in Plant Conservation, Pages 297-308. DOI: http://dx.doi.org/10.1080/07929978.2016.1257105
Ortiz-Ramírez, C., Hernandez-Coronado, M., Thamm, A., Catarino, B., Wang, M., Dolan, L., Feijó, J.A. and Becker, J.D.A (2016) Physcomitrella Patens Comprehensive Transcriptome Atlas Provides Insights into the Evolution and Development of Land Plants, Molecular Plant, 9, 205–220. DOI: 10.1016/j.molp.2015.12.002
Rajasekar, K.V., Zdanowski, K., Yan, J., Hopper, J.T.S., Francis, M.-L.R., Seepersad, C., Sharp, C., Pecqueur, L., Werner, J.M., Robinson, C.V., Mohammed, S., Potts, J.R., Kleanthous, C. (2016) The Anti-sigma Factor RsrA Responds to Oxidative Stress by Reburying its Hydrophobic Core, Nature Communications, 7: 12194. DOI: 10.1038/ncomms12194
Willems, N., Lelimousin, M., Koldsø, H., Sansom, M.S.P. (2016) Interfacial Enzymes and their Interactions with Surfaces: Molecular Simulation Studies, Understanding Enzymes; Function, Design, Engineering and Analysis, Pages 297–317. DOI: 10.1201/b19951-10
Seward, E.A., Kelly, S. (2016) Dietary Nitrogen Alters Codon Bias and Genome Composition in Parasitic Microorganisms, Genome Biology, 17: 226. DOI: 10.1186/s13059-016-1087-9
Seward, E.A., Votýpka, J., Kment, P., Lukeš, J., Kelly, S. (2016) Description of Phytomonas oxycareni n. sp. from the Salivary Glands of Oxycarenus lavaterae, Protist, 168: 71-79. DOI: https://doi.org/10.1016/j.protis.2016.11.002
Weiner, A., Mellouk, N., Lopez-Montero, N., Chang, Y.Y., Souque, C., Schmitt, C., Enninga, J., (2016) Macropinosomes are Key Players in Early Shigella Invasion and Vacuolar Escape in Epithelial Cells, PLoS Pathogens, 12: e1005602. DOI: https://doi.org/10.1371/journal.ppat.1005602
Watts, I., Nagy, M., de Perera, T. B., Biro, D. (2016) Misinformed Leaders Lose Influence over Pigeon Flocks, Biology Letters, 12. DOI: 10.1098/rsbl.2016.0544
Watts, I., Pettit, B, Nagy, M, de Perera, T. B., Biro, D. (2016) Lack of Experience-based Stratification in Homing Pigeon Leadership Hierarchies, Royal Society Open Science, 3: 150518. DOI: 10.1098/rsos.150518
2015
Brem, J., van Berkel, S.S., Zollman, D., Lee, S.Y., Gileadi, O., McHugh, P.J., Walsh, T.R., McDonough, M.A., Schofield, C.J. (2015) Structural Basis of Metallo-β-lactamase Inhibition by Captopril Stereoisomers, Antimicrobial Agents and Chemotherapy, 60(1): 142-50. DOI: 10.1128/AAC.01335-15
Cardiel, J.M. and Muñoz-Rodríguez, P. (2015) Synopsis of Acalypha (Euphorbiaceae) of Northern Argentina, Paraguay and Uruguay, Annals of the Missouri Botanical Garden, 101(2): 384-405. DOI: 10.3417/2014006
Galson, J. D., Clutterbuck, E., Truck, J., Ramasamy, M.N., Munz, M., Fowler, A., Cerundolo, V., Pollard, A.J., Lunter, G. and Kelly, D.F. (2015) BCR Repertoire Sequencing: Different Patterns of B-cell Activation after Two Meningococcal Vaccines, Immunology and Cell Biology, 93(10):885-95, DOI:10.1038/icb.2015.57
Galson, J.D., Truck, J., Fowler, A., Clutterbuck, E., Munz, M., Cerundolo, V., Reinhard, C., van der Most, R., Pollard, A.J., Lunter, G. and Kelly, D.F. (2015) Analysis of B Cell Repertoire Dynamics Following Hepatitis B Vaccination in Humans, and Enrichment of Vaccine-specific Antibody Sequences, EBioMedicine, 2(12): 2070-2079. DOI: https://doi.org/10.1016/j.ebiom.2015.11.034
Galson, J.D., Truck, J., Fowler, A., Munz, M., Cerundolo, V., Pollard, A.J., Lunter, G., and Kelly, D.F. (2015) In-depth Assessment of Within-individual and Inter-Individual Variation in the B Cell Receptor Repertoire, Frontiers in Immunology, 6: 531. DOI: 10.3389/fimmu.2015.00531
Galson, J.D. and O’Connor, D. (2015) Immunogenicity, eLS, 1-8. DOI: 10.1002/9780470015902.a0000937
Kessler, S., Tiedeken, E.J., Simcock, K., Derveau, S., Mitchell, J., Softley, S., Stout, J., Wright, G.A. (2015) “Bees prefer foods containing neonicotinoid pesticides”. Nature 521: 74-76. doi:10.1038/nature14414
Mauchline, T.H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., McMillan, V., Canning, G., Powers, S.J., Hammond-Kosack, K.E., Hirsch, P.R., Clark, I.M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J.G. (2015) An Analysis of Pseudomonas Genomic Diversity in Take-all Infected Wheat Fields Reveals the Lasting Impact of Wheat Cultivars on the Soil Microbiota, Environmental Microbiology, 17: 4764–4778. DOI: 10.1111/1462-2920.13038
Mehrabi, Z., Bell, T., and Lewis, O.T. (2015) Plant-soil Feedbacks from 30-year Family Specific Cultures, Ecology and Evolution, 5 (12): 2333–2339. DOI: 10.1002/ece3.1487
Nikoloski, Z., Perez-Storey, R. and Sweetlove, L.J. (2015) Inference and Prediction of Metabolic Network Fluxes, Plant Physiology, 169(3): 1443-1455. DOI: 10.1104/pp.15.01082
Yates, L.A., Durrant, B.P., Barber, M., Harlos, K., Fleurdepine, S., Norbury, C.J., Gilbert R.J.C. (2015) Improved Crystallization and Diffraction of Caffeine-induced Death Suppressor Protein 1 (Cid1), Acta Crystallographica, 71(Pt 3): 346-53. DOI: 10.1107/S2053230X15001351
2014
Betts, A., Kaltz, O., Hochberg, M.E., (2014) Contrasted Coevolutionary Dynamics between a Bacterial Pathogen and its Bacteriophages, PNAS, vol. 111 no. 30, 11109-11114. DOI: 10.1073/pnas.1406763111
Galson, J.D., Pollard, A.J., Trück, J. and Kelly, D.F. (2014) Studying the Antibody Repertoire after Vaccination: Practical Applications, Trends in Immunology, 35(7): 319-331. DOI: http://dx.doi.org/10.1016/j.it.2014.04.005
Hughes, T.E., Langdale, J.A., Kelly, S. (2014) The Impact of Widespread Regulatory Neofunctionalization on Homeolog Gene Evolution Following Whole-Genome Duplication in Maize, Genome Research, 24: 1348-1355. DOI: 10.1101/gr.172684.114
Mehrabi, Z., Slade, E., Solis, A., and Mann, D.J. (2014) The Importance of the Microhabitat for Biodiversity Sampling, PLoS ONE, 9(12): e114015. DOI: 10.1371/journal.pone.0114015
Mehrabi, Z., Tuck, S.L. (2014) Relatedness is a Poor Predictor of Negative Plant–Soil Feedbacks, New Phytologist, 205(3): 1071-75. DOI: 10.1111/nph.13238
Schwitzer C, Mittermeier RA, Rylands AB, Taylor LA, Chiozza F, Williamson EA, Wallis J & Clark FE (eds.) (2014) “Primates in peril: The world’s 25 most endangered primates 2012-2014”. IUCN/SSC Primate Specialist Group (PSG), International Primatological Society (IPS), Conservation International (CI) and Bristol Zoological Society, Arlington, VA. 40pp ISBN 978-1-934151-69-3
Trück, J., Ramasamy, M.N., Galson, J.D., Rance, R., Parkhill, J., Lunter, G., Pollard, A. J. and Kelly, D.F. (2014) Identification of Antigen-Specific B Cell Receptor Sequences Using Public Repertoire Analysis, Journal of Immunology, 194 (1): 252-261. DOI: https://doi.org/10.4049/jimmunol.1401405
2013
Taylor, L.A., Kaiser, T.M., Schwitzer, C., Müller, D.W.H., Codron, D., Clauss, M., and Schulz, E. (2013) Detecting Inter-Cusp and Inter-Tooth Wear Patterns in Rhinocerotids, PLoS ONE, 8(12): e80921. DOI: https://doi.org/10.1371/journal.pone.0080921
